AEPsych
Demos
Docs
Tutorials
API Reference
GitHub
Index
A
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B
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C
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D
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E
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F
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G
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H
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I
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J
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
A
accept_client() (aepsych.server.sockets.PySocket method)
AcqArgProtocol (class in aepsych.generators.base)
acquisition() (aepsych.acquisition.BernoulliMCMutualInformation method)
(aepsych.acquisition.lse.MCLevelSetEstimation method)
(aepsych.acquisition.mc_posterior_variance.MCPosteriorVariance method)
(aepsych.acquisition.mc_posterior_variance.MonotonicMCPosteriorVariance method)
(aepsych.acquisition.MCLevelSetEstimation method)
(aepsych.acquisition.MCPosteriorVariance method)
(aepsych.acquisition.monotonic_rejection.MonotonicMCAcquisition method)
(aepsych.acquisition.monotonic_rejection.MonotonicMCLSE method)
(aepsych.acquisition.MonotonicBernoulliMCMutualInformation method)
(aepsych.acquisition.MonotonicMCLSE method)
(aepsych.acquisition.MonotonicMCPosteriorVariance method)
(aepsych.acquisition.mutual_information.BernoulliMCMutualInformation method)
(aepsych.acquisition.mutual_information.MonotonicBernoulliMCMutualInformation method)
add_data() (aepsych.strategy.SequentialStrategy method)
(aepsych.strategy.Strategy method)
aepsych.acquisition
module
aepsych.acquisition.bvn
module
aepsych.acquisition.lookahead
module
aepsych.acquisition.lookahead_utils
module
aepsych.acquisition.lse
module
aepsych.acquisition.mc_posterior_variance
module
aepsych.acquisition.monotonic_rejection
module
aepsych.acquisition.mutual_information
module
aepsych.acquisition.objective
module
aepsych.acquisition.rejection_sampler
module
aepsych.benchmark
module
aepsych.benchmark.benchmark
module
aepsych.benchmark.pathos_benchmark
module
aepsych.benchmark.problem
module
aepsych.benchmark.test_functions
module
aepsych.config
module
aepsych.database
module
aepsych.database.db
module
aepsych.database.tables
module
aepsych.factory
module
aepsych.factory.factory
module
aepsych.generators
module
aepsych.generators.base
module
aepsych.generators.epsilon_greedy_generator
module
aepsych.generators.manual_generator
module
aepsych.generators.monotonic_rejection_generator
module
aepsych.generators.monotonic_thompson_sampler_generator
module
aepsych.generators.optimize_acqf_generator
module
aepsych.generators.random_generator
module
aepsych.generators.sobol_generator
module
aepsych.kernels
module
aepsych.kernels.rbf_partial_grad
module
aepsych.likelihoods
module
aepsych.means
module
aepsych.means.constant_partial_grad
module
aepsych.models
module
aepsych.models.base
module
aepsych.models.derivative_gp
module
aepsych.models.gp_classification
module
aepsych.models.monotonic_rejection_gp
module
aepsych.plotting
module
aepsych.server
module
aepsych.server.server
module
aepsych.server.sockets
module
aepsych.strategy
module
aepsych.utils
module
aepsych.utils_logging
module
AEPsychGenerationStep (class in aepsych.generators.base)
AEPsychGenerator (class in aepsych.generators.base)
AEPsychMixin (class in aepsych.models.base)
AEPsychModel (class in aepsych.models.base)
AEPsychObjective (class in aepsych.acquisition.objective)
AEPsychServer (class in aepsych.server)
(class in aepsych.server.server)
AEPsychStrategy (class in aepsych.strategy)
ApproxGlobalSUR (class in aepsych.acquisition)
(class in aepsych.acquisition.lookahead)
approximate_lookahead_levelset_at_xstar() (in module aepsych.acquisition.lookahead_utils)
AxOptimizeAcqfGenerator (class in aepsych.generators)
(class in aepsych.generators.optimize_acqf_generator)
AxRandomGenerator (class in aepsych.generators)
(class in aepsych.generators.random_generator)
AxSobolGenerator (class in aepsych.generators)
(class in aepsych.generators.sobol_generator)
B
bald_acq() (in module aepsych.acquisition.mutual_information)
balv_acq() (in module aepsych.acquisition.mc_posterior_variance)
Base (class in aepsych.database.tables)
baseline_requiring_acqfs (aepsych.generators.base.AEPsychGenerator attribute)
BEMPS (class in aepsych.acquisition.lookahead)
Benchmark (class in aepsych.benchmark)
(class in aepsych.benchmark.benchmark)
BernoulliMCMutualInformation (class in aepsych.acquisition)
(class in aepsych.acquisition.mutual_information)
BernoulliObjectiveLikelihood (class in aepsych.likelihoods)
BetaRegressionGP (class in aepsych.models)
BinaryClassificationGP (class in aepsych.models)
bounds (aepsych.benchmark.Problem property)
(aepsych.benchmark.problem.Problem property)
(aepsych.models.base.AEPsychMixin property)
(aepsych.models.base.ModelProtocol property)
bvn_cdf() (in module aepsych.acquisition.bvn)
C
calculate_probs() (aepsych.models.OrdinalGPModel method)
can_fit (aepsych.strategy.AEPsychStrategy property)
(aepsych.strategy.Strategy property)
can_pregen_ask (aepsych.server.AEPsychServer property)
(aepsych.server.server.AEPsychServer property)
children_config (aepsych.database.tables.DBMasterTable attribute)
children_outcome (aepsych.database.tables.DbRawTable attribute)
children_param (aepsych.database.tables.DbRawTable attribute)
children_raw (aepsych.database.tables.DBMasterTable attribute)
children_replay (aepsych.database.tables.DBMasterTable attribute)
children_strat (aepsych.database.tables.DBMasterTable attribute)
ClassErr() (in module aepsych.acquisition.lookahead)
classname (aepsych.generators.AxRandomGenerator attribute)
(aepsych.generators.random_generator.AxRandomGenerator attribute)
cleanup() (aepsych.server.AEPsychServer method)
(aepsych.server.server.AEPsychServer method)
close() (aepsych.server.sockets.DummySocket method)
(aepsych.server.sockets.PySocket method)
collate_benchmarks() (aepsych.benchmark.pathos_benchmark.PathosBenchmark method)
(aepsych.benchmark.PathosBenchmark method)
complete_existing_trial() (aepsych.strategy.AEPsychStrategy method)
complete_new_trial() (aepsych.strategy.AEPsychStrategy method)
completion_criteria (aepsych.generators.AxRandomGenerator attribute)
config (aepsych.database.tables.DbConfigTable attribute)
(aepsych.server.AEPsychServer property)
(aepsych.server.server.AEPsychServer property)
Config (class in aepsych.config)
ConfigurableMixin (class in aepsych.config)
ConstantMeanPartialObsGrad (class in aepsych.means.constant_partial_grad)
construct_inputs() (aepsych.models.base.AEPsychModel class method)
(aepsych.models.GPRegressionModel class method)
(aepsych.models.MultitaskGPRModel class method)
(aepsych.models.VariationalGP class method)
(in module aepsych.acquisition.mc_posterior_variance)
construct_inputs_global_lookahead() (in module aepsych.acquisition.lookahead)
construct_inputs_local_lookahead() (in module aepsych.acquisition.lookahead)
construct_inputs_lse() (in module aepsych.acquisition.lse)
construct_inputs_mi() (in module aepsych.acquisition.mutual_information)
ContinuousRegressionGP (class in aepsych.models)
convert() (aepsych.config.Config method)
convert_to_latest() (aepsych.config.Config method)
cutpoints (aepsych.likelihoods.OrdinalLikelihood property)
D
Database (class in aepsych.database.db)
DbConfigTable (class in aepsych.database.tables)
DBMasterTable (class in aepsych.database.tables)
DbOutcomeTable (class in aepsych.database.tables)
DbParamTable (class in aepsych.database.tables)
DbRawTable (class in aepsych.database.tables)
DbReplayTable (class in aepsych.database.tables)
DbStratTable (class in aepsych.database.tables)
default_loss_constraint_fun() (in module aepsych.generators.monotonic_rejection_generator)
default_mean_covar_factory() (in module aepsych.factory)
(in module aepsych.factory.factory)
delete_db() (aepsych.database.db.Database method)
DerivedValue (class in aepsych.benchmark)
(class in aepsych.benchmark.benchmark)
dim (aepsych.models.base.ModelProtocol property)
dim_grid() (aepsych.models.base.AEPsychMixin method)
(aepsych.models.base.ModelProtocol method)
(in module aepsych.utils)
discrim_highdim() (in module aepsych.benchmark)
(in module aepsych.benchmark.test_functions)
DummySocket (class in aepsych.server.sockets)
E
EAVC (class in aepsych.acquisition)
(class in aepsych.acquisition.lookahead)
EAVC_fn() (in module aepsych.acquisition.lookahead)
ensure_model_is_fresh() (in module aepsych.strategy)
EpsilonGreedyGenerator (class in aepsych.generators)
(class in aepsych.generators.epsilon_greedy_generator)
eval_grid (aepsych.benchmark.Problem property)
(aepsych.benchmark.problem.Problem property)
evaluate() (aepsych.benchmark.LSEProblem method)
(aepsych.benchmark.Problem method)
(aepsych.benchmark.problem.LSEProblem method)
(aepsych.benchmark.problem.Problem method)
ExactGP (class in aepsych.models)
execute_sql_query() (aepsych.database.db.Database method)
expected_log_prob() (aepsych.likelihoods.LinearBernoulliLikelihood method)
experiment (aepsych.strategy.AEPsychStrategy property)
experiment_description (aepsych.database.tables.DBMasterTable attribute)
experiment_id (aepsych.database.tables.DBMasterTable attribute)
experiment_name (aepsych.database.tables.DBMasterTable attribute)
extra_info (aepsych.database.tables.DbReplayTable attribute)
extra_metadata (aepsych.database.tables.DBMasterTable attribute)
extremum_solver (aepsych.models.base.AEPsychMixin attribute)
(aepsych.models.base.AEPsychModel attribute)
(aepsych.models.base.ModelProtocol property)
F
f() (aepsych.benchmark.Problem method)
(aepsych.benchmark.problem.Problem method)
(aepsych.likelihoods.LinearBernoulliLikelihood method)
f_hat() (aepsych.benchmark.Problem method)
(aepsych.benchmark.problem.Problem method)
f_threshold() (aepsych.benchmark.LSEProblem method)
(aepsych.benchmark.problem.LSEProblem method)
f_true (aepsych.benchmark.Problem property)
(aepsych.benchmark.problem.Problem property)
finish() (aepsych.strategy.AEPsychStrategy method)
(aepsych.strategy.SequentialStrategy method)
(aepsych.strategy.Strategy method)
finished (aepsych.strategy.AEPsychStrategy property)
(aepsych.strategy.SequentialStrategy property)
(aepsych.strategy.Strategy property)
finished() (aepsych.generators.base.AEPsychGenerationStep method)
fit() (aepsych.models.base.AEPsychModel method)
(aepsych.models.base.ModelProtocol method)
(aepsych.models.gp_classification.GPClassificationModel method)
(aepsych.models.GPClassificationModel method)
(aepsych.models.GPRegressionModel method)
(aepsych.models.monotonic_rejection_gp.MonotonicRejectionGP method)
(aepsych.models.MonotonicRejectionGP method)
(aepsych.models.PairwiseProbitModel method)
(aepsych.models.SemiParametricGPModel method)
(aepsych.strategy.Strategy method)
flatten_config() (aepsych.benchmark.Benchmark method)
(aepsych.benchmark.benchmark.Benchmark method)
FloorGumbelObjective (class in aepsych.acquisition)
(class in aepsych.acquisition.objective)
FloorLogitObjective (class in aepsych.acquisition)
(class in aepsych.acquisition.objective)
FloorProbitObjective (class in aepsych.acquisition)
(class in aepsych.acquisition.objective)
forward() (aepsych.acquisition.BernoulliMCMutualInformation method)
(aepsych.acquisition.lookahead.GlobalLookaheadAcquisitionFunction method)
(aepsych.acquisition.lookahead.LocalLookaheadAcquisitionFunction method)
(aepsych.acquisition.lse.MCLevelSetEstimation method)
(aepsych.acquisition.mc_posterior_variance.MCPosteriorVariance method)
(aepsych.acquisition.MCLevelSetEstimation method)
(aepsych.acquisition.MCPosteriorVariance method)
(aepsych.acquisition.monotonic_rejection.MonotonicMCAcquisition method)
(aepsych.acquisition.mutual_information.BernoulliMCMutualInformation method)
(aepsych.acquisition.objective.ProbitObjective method)
(aepsych.acquisition.objective.SemiPProbabilityObjective method)
(aepsych.acquisition.objective.SemiPThresholdObjective method)
(aepsych.acquisition.ProbitObjective method)
(aepsych.acquisition.rejection_sampler.RejectionSampler method)
(aepsych.kernels.rbf_partial_grad.RBFKernelPartialObsGrad method)
(aepsych.likelihoods.BernoulliObjectiveLikelihood method)
(aepsych.likelihoods.LinearBernoulliLikelihood method)
(aepsych.likelihoods.OrdinalLikelihood method)
(aepsych.means.constant_partial_grad.ConstantMeanPartialObsGrad method)
(aepsych.models.base.AEPsychMixin method)
(aepsych.models.derivative_gp.MixedDerivativeVariationalGP method)
(aepsych.models.HadamardSemiPModel method)
(aepsych.models.IndependentMultitaskGPRModel method)
(aepsych.models.monotonic_rejection_gp.MonotonicRejectionGP method)
(aepsych.models.MonotonicRejectionGP method)
(aepsych.models.MultitaskGPRModel method)
from_config() (aepsych.acquisition.objective.SemiPProbabilityObjective class method)
(aepsych.acquisition.objective.SemiPThresholdObjective class method)
(aepsych.config.ConfigurableMixin class method)
(aepsych.generators.base.AcqArgProtocol class method)
(aepsych.generators.base.AEPsychGenerator class method)
(aepsych.generators.epsilon_greedy_generator.EpsilonGreedyGenerator class method)
(aepsych.generators.EpsilonGreedyGenerator class method)
(aepsych.generators.manual_generator.ManualGenerator class method)
(aepsych.generators.ManualGenerator class method)
(aepsych.generators.monotonic_rejection_generator.MonotonicRejectionGenerator class method)
(aepsych.generators.monotonic_thompson_sampler_generator.MonotonicThompsonSamplerGenerator class method)
(aepsych.generators.MonotonicRejectionGenerator class method)
(aepsych.generators.MonotonicThompsonSamplerGenerator class method)
(aepsych.generators.optimize_acqf_generator.OptimizeAcqfGenerator class method)
(aepsych.generators.OptimizeAcqfGenerator class method)
(aepsych.generators.PairwiseOptimizeAcqfGenerator class method)
(aepsych.generators.PairwiseSobolGenerator class method)
(aepsych.generators.random_generator.RandomGenerator class method)
(aepsych.generators.RandomGenerator class method)
(aepsych.generators.sobol_generator.SobolGenerator class method)
(aepsych.generators.SobolGenerator class method)
(aepsych.likelihoods.BernoulliObjectiveLikelihood class method)
(aepsych.likelihoods.LinearBernoulliLikelihood class method)
(aepsych.likelihoods.OrdinalLikelihood class method)
(aepsych.models.gp_classification.GPClassificationModel class method)
(aepsych.models.GPClassificationModel class method)
(aepsych.models.GPRegressionModel class method)
(aepsych.models.HadamardSemiPModel class method)
(aepsych.models.monotonic_rejection_gp.MonotonicRejectionGP class method)
(aepsych.models.MonotonicProjectionGP class method)
(aepsych.models.MonotonicRejectionGP class method)
(aepsych.models.PairwiseProbitModel class method)
(aepsych.models.SemiParametricGPModel class method)
(aepsych.strategy.SequentialStrategy class method)
(aepsych.strategy.Strategy class method)
from_sqlite() (aepsych.database.tables.DbConfigTable class method)
(aepsych.database.tables.DBMasterTable class method)
(aepsych.database.tables.DbOutcomeTable class method)
(aepsych.database.tables.DbParamTable class method)
(aepsych.database.tables.DbRawTable class method)
(aepsych.database.tables.DbReplayTable class method)
(aepsych.database.tables.DbStratTable class method)
G
gen() (aepsych.generators.base.AEPsychGenerator method)
(aepsych.generators.epsilon_greedy_generator.EpsilonGreedyGenerator method)
(aepsych.generators.EpsilonGreedyGenerator method)
(aepsych.generators.IntensityAwareSemiPGenerator method)
(aepsych.generators.manual_generator.ManualGenerator method)
(aepsych.generators.ManualGenerator method)
(aepsych.generators.monotonic_rejection_generator.MonotonicRejectionGenerator method)
(aepsych.generators.monotonic_thompson_sampler_generator.MonotonicThompsonSamplerGenerator method)
(aepsych.generators.MonotonicRejectionGenerator method)
(aepsych.generators.MonotonicThompsonSamplerGenerator method)
(aepsych.generators.optimize_acqf_generator.OptimizeAcqfGenerator method)
(aepsych.generators.OptimizeAcqfGenerator method)
(aepsych.generators.random_generator.RandomGenerator method)
(aepsych.generators.RandomGenerator method)
(aepsych.generators.sobol_generator.SobolGenerator method)
(aepsych.generators.SobolGenerator method)
(aepsych.strategy.AEPsychStrategy method)
(aepsych.strategy.SequentialStrategy method)
(aepsych.strategy.Strategy method)
generate_debug_info() (aepsych.server.AEPsychServer method)
(aepsych.server.server.AEPsychServer method)
generate_experiment_table() (aepsych.server.AEPsychServer method)
(aepsych.server.server.AEPsychServer method)
get_all_outcomes_for() (aepsych.database.db.Database method)
get_all_params_for() (aepsych.database.db.Database method)
get_config_args() (aepsych.models.IndependentMultitaskGPRModel class method)
get_config_for() (aepsych.database.db.Database method)
get_config_options() (aepsych.config.ConfigurableMixin class method)
(aepsych.generators.AxOptimizeAcqfGenerator class method)
(aepsych.generators.AxRandomGenerator class method)
(aepsych.generators.AxSobolGenerator class method)
(aepsych.generators.base.AEPsychGenerationStep class method)
(aepsych.generators.MultiOutcomeOptimizationGenerator class method)
(aepsych.generators.optimize_acqf_generator.AxOptimizeAcqfGenerator class method)
(aepsych.generators.optimize_acqf_generator.OptimizeAcqfGenerator class method)
(aepsych.generators.OptimizeAcqfGenerator class method)
(aepsych.generators.random_generator.AxRandomGenerator class method)
(aepsych.generators.sobol_generator.AxSobolGenerator class method)
(aepsych.generators.sobol_generator.SobolGenerator class method)
(aepsych.generators.SobolGenerator class method)
(aepsych.models.base.AEPsychModel class method)
(aepsych.models.BetaRegressionGP class method)
(aepsych.models.BinaryClassificationGP class method)
(aepsych.models.OrdinalGP class method)
(aepsych.models.VariationalGP class method)
(aepsych.strategy.AEPsychStrategy class method)
get_dataframe_from_replay() (aepsych.server.AEPsychServer method)
(aepsych.server.server.AEPsychServer method)
get_dim() (in module aepsych.utils)
get_engine() (aepsych.database.db.Database method)
get_jnd() (aepsych.models.base.AEPsychMixin method)
(aepsych.strategy.Strategy method)
get_jnd_1d() (in module aepsych.utils)
get_jnd_multid() (in module aepsych.utils)
get_lse_contour() (in module aepsych.utils)
get_lse_interval() (in module aepsych.utils)
get_master_record() (aepsych.database.db.Database method)
get_master_records() (aepsych.database.db.Database method)
get_max() (aepsych.models.base.AEPsychMixin method)
(aepsych.models.base.AEPsychModel method)
(aepsych.strategy.Strategy method)
get_min() (aepsych.models.base.AEPsychMixin method)
(aepsych.models.base.AEPsychModel method)
(aepsych.strategy.Strategy method)
get_mll_class() (aepsych.models.base.AEPsychModel method)
(aepsych.models.ExactGP class method)
(aepsych.models.VariationalGP class method)
get_next_filename() (in module aepsych.server.server)
get_objectives() (in module aepsych.utils)
get_outcome_for() (aepsych.database.db.Database method)
get_param_for() (aepsych.database.db.Database method)
get_parameters() (in module aepsych.utils)
get_pareto_optimal_parameters() (aepsych.strategy.AEPsychStrategy method)
get_raw_for() (aepsych.database.db.Database method)
get_replay_for() (aepsych.database.db.Database method)
get_section() (aepsych.config.Config method)
get_strat_for() (aepsych.database.db.Database method)
get_strat_from_replay() (aepsych.server.AEPsychServer method)
(aepsych.server.server.AEPsychServer method)
get_strats_for() (aepsych.database.db.Database method)
get_strats_from_replay() (aepsych.server.AEPsychServer method)
(aepsych.server.server.AEPsychServer method)
getLogger() (in module aepsych.utils_logging)
GlobalLookaheadAcquisitionFunction (class in aepsych.acquisition.lookahead)
GlobalMI (class in aepsych.acquisition)
(class in aepsych.acquisition.lookahead)
GlobalSUR (class in aepsych.acquisition)
(class in aepsych.acquisition.lookahead)
GPBetaRegressionModel (class in aepsych.models)
(class in aepsych.models.gp_classification)
GPClassificationModel (class in aepsych.models)
(class in aepsych.models.gp_classification)
GPRegressionModel (class in aepsych.models)
H
HadamardSemiPModel (class in aepsych.models)
handle_request() (aepsych.server.AEPsychServer method)
(aepsych.server.server.AEPsychServer method)
Hb() (in module aepsych.acquisition.lookahead)
I
IndependentMultitaskGPRModel (class in aepsych.models)
IntensityAwareSemiPGenerator (class in aepsych.generators)
interpolate_monotonic() (in module aepsych.utils)
inv_query() (aepsych.models.base.AEPsychMixin method)
(aepsych.models.base.AEPsychModel method)
(aepsych.strategy.Strategy method)
inverse() (aepsych.acquisition.objective.AEPsychObjective method)
(aepsych.acquisition.objective.ProbitObjective method)
(aepsych.acquisition.ProbitObjective method)
inverse_link() (aepsych.acquisition.FloorGumbelObjective method)
(aepsych.acquisition.FloorLogitObjective method)
(aepsych.acquisition.FloorProbitObjective method)
(aepsych.acquisition.objective.FloorGumbelObjective method)
(aepsych.acquisition.objective.FloorLogitObjective method)
(aepsych.acquisition.objective.FloorProbitObjective method)
is_done (aepsych.benchmark.pathos_benchmark.PathosBenchmark property)
(aepsych.benchmark.PathosBenchmark property)
is_finished (aepsych.strategy.AEPsychStrategy attribute)
is_update_required() (aepsych.database.db.Database method)
iteration_id (aepsych.database.tables.DbOutcomeTable attribute)
(aepsych.database.tables.DbParamTable attribute)
J
jsonifyAll() (aepsych.config.Config method)
jsonifyMetadata() (aepsych.config.Config method)
L
lb (aepsych.benchmark.Problem property)
(aepsych.benchmark.problem.Problem property)
(aepsych.models.base.ModelProtocol property)
likelihood (aepsych.models.base.ModelProtocol property)
(aepsych.models.GPBetaRegressionModel attribute)
(aepsych.models.GPClassificationModel attribute)
(aepsych.models.MonotonicRejectionGP attribute)
LinearBernoulliLikelihood (class in aepsych.likelihoods)
link() (aepsych.acquisition.FloorGumbelObjective method)
(aepsych.acquisition.FloorLogitObjective method)
(aepsych.acquisition.FloorProbitObjective method)
(aepsych.acquisition.objective.FloorGumbelObjective method)
(aepsych.acquisition.objective.FloorLogitObjective method)
(aepsych.acquisition.objective.FloorProbitObjective method)
list_master_records() (aepsych.database.db.Database method)
LocalLookaheadAcquisitionFunction (class in aepsych.acquisition.lookahead)
LocalMI (class in aepsych.acquisition)
(class in aepsych.acquisition.lookahead)
LocalSUR (class in aepsych.acquisition)
(class in aepsych.acquisition.lookahead)
log_at() (aepsych.benchmark.Benchmark method)
(aepsych.benchmark.benchmark.Benchmark method)
lookahead_levelset_at_xstar() (in module aepsych.acquisition.lookahead_utils)
lookahead_p_at_xstar() (in module aepsych.acquisition.lookahead_utils)
LookaheadAcquisitionFunction (class in aepsych.acquisition.lookahead)
LSEProblem (class in aepsych.benchmark)
(class in aepsych.benchmark.problem)
M
main() (in module aepsych.server.server)
make_benchmark_list() (aepsych.benchmark.Benchmark method)
(aepsych.benchmark.benchmark.Benchmark method)
make_scaled_sobol() (in module aepsych.utils)
make_songetal_testfun() (in module aepsych.benchmark)
(in module aepsych.benchmark.test_functions)
make_songetal_threshfun() (in module aepsych.benchmark.test_functions)
make_strat_and_flatconfig() (aepsych.benchmark.Benchmark method)
(aepsych.benchmark.benchmark.Benchmark method)
ManualGenerator (class in aepsych.generators)
(class in aepsych.generators.manual_generator)
master_table_id (aepsych.database.tables.DbConfigTable attribute)
(aepsych.database.tables.DbRawTable attribute)
(aepsych.database.tables.DbReplayTable attribute)
(aepsych.database.tables.DbStratTable attribute)
materialize_config() (aepsych.benchmark.Benchmark method)
(aepsych.benchmark.benchmark.Benchmark method)
MCLevelSetEstimation (class in aepsych.acquisition)
(class in aepsych.acquisition.lse)
MCPosteriorVariance (class in aepsych.acquisition)
(class in aepsych.acquisition.mc_posterior_variance)
message_contents (aepsych.database.tables.DbReplayTable attribute)
message_type (aepsych.database.tables.DbReplayTable attribute)
metadata (aepsych.benchmark.LSEProblem property)
(aepsych.benchmark.Problem property)
(aepsych.benchmark.problem.LSEProblem property)
(aepsych.benchmark.problem.Problem property)
(aepsych.database.tables.Base attribute)
MI_fn() (in module aepsych.acquisition.lookahead)
MixedDerivativeVariationalGP (class in aepsych.models.derivative_gp)
MOCU (class in aepsych.acquisition.lookahead)
model (aepsych.generators.AxRandomGenerator attribute)
(aepsych.generators.random_generator.AxRandomGenerator attribute)
model_data (aepsych.database.tables.DbRawTable attribute)
model_specs (aepsych.generators.AxRandomGenerator attribute)
ModelProtocol (class in aepsych.models.base)
modified_hartmann6() (in module aepsych.benchmark)
(in module aepsych.benchmark.test_functions)
module
aepsych.acquisition
aepsych.acquisition.bvn
aepsych.acquisition.lookahead
aepsych.acquisition.lookahead_utils
aepsych.acquisition.lse
aepsych.acquisition.mc_posterior_variance
aepsych.acquisition.monotonic_rejection
aepsych.acquisition.mutual_information
aepsych.acquisition.objective
aepsych.acquisition.rejection_sampler
aepsych.benchmark
aepsych.benchmark.benchmark
aepsych.benchmark.pathos_benchmark
aepsych.benchmark.problem
aepsych.benchmark.test_functions
aepsych.config
aepsych.database
aepsych.database.db
aepsych.database.tables
aepsych.factory
aepsych.factory.factory
aepsych.generators
aepsych.generators.base
aepsych.generators.epsilon_greedy_generator
aepsych.generators.manual_generator
aepsych.generators.monotonic_rejection_generator
aepsych.generators.monotonic_thompson_sampler_generator
aepsych.generators.optimize_acqf_generator
aepsych.generators.random_generator
aepsych.generators.sobol_generator
aepsych.kernels
aepsych.kernels.rbf_partial_grad
aepsych.likelihoods
aepsych.means
aepsych.means.constant_partial_grad
aepsych.models
aepsych.models.base
aepsych.models.derivative_gp
aepsych.models.gp_classification
aepsych.models.monotonic_rejection_gp
aepsych.plotting
aepsych.server
aepsych.server.server
aepsych.server.sockets
aepsych.strategy
aepsych.utils
aepsych.utils_logging
monotonic_mean_covar_factory() (in module aepsych.factory)
(in module aepsych.factory.factory)
MonotonicBernoulliMCMutualInformation (class in aepsych.acquisition)
(class in aepsych.acquisition.mutual_information)
MonotonicMCAcquisition (class in aepsych.acquisition.monotonic_rejection)
MonotonicMCLSE (class in aepsych.acquisition)
(class in aepsych.acquisition.monotonic_rejection)
MonotonicMCPosteriorVariance (class in aepsych.acquisition)
(class in aepsych.acquisition.mc_posterior_variance)
MonotonicProjectionGP (class in aepsych.models)
MonotonicRejectionGenerator (class in aepsych.generators)
(class in aepsych.generators.monotonic_rejection_generator)
MonotonicRejectionGP (class in aepsych.models)
(class in aepsych.models.monotonic_rejection_gp)
MonotonicThompsonSamplerGenerator (class in aepsych.generators)
(class in aepsych.generators.monotonic_thompson_sampler_generator)
MultiOutcomeOptimizationGenerator (class in aepsych.generators)
MultitaskGPRModel (class in aepsych.models)
N
n_eval_points (aepsych.benchmark.Problem attribute)
(aepsych.benchmark.problem.Problem attribute)
n_strats (aepsych.server.AEPsychServer property)
(aepsych.server.server.AEPsychServer property)
n_trials (aepsych.strategy.Strategy property)
name (aepsych.benchmark.Problem property)
(aepsych.benchmark.problem.Problem property)
normalize_inputs() (aepsych.models.base.AEPsychMixin method)
(aepsych.strategy.Strategy method)
novel_detection_testfun() (in module aepsych.benchmark)
(in module aepsych.benchmark.test_functions)
novel_discrimination_testfun() (in module aepsych.benchmark)
(in module aepsych.benchmark.test_functions)
num_benchmarks (aepsych.benchmark.Benchmark property)
(aepsych.benchmark.benchmark.Benchmark property)
num_outputs_per_input() (aepsych.kernels.rbf_partial_grad.RBFKernelPartialObsGrad method)
num_trials (aepsych.generators.AxRandomGenerator attribute)
O
OptimizeAcqfGenerator (class in aepsych.generators)
(class in aepsych.generators.optimize_acqf_generator)
ordinal_mean_covar_factory() (in module aepsych.factory)
(in module aepsych.factory.factory)
OrdinalGP (class in aepsych.models)
OrdinalGPModel (class in aepsych.models)
OrdinalLikelihood (class in aepsych.likelihoods)
outcome_name (aepsych.database.tables.DbOutcomeTable attribute)
outcome_type (aepsych.models.base.AEPsychModel attribute)
(aepsych.models.base.ModelProtocol property)
(aepsych.models.BetaRegressionGP attribute)
(aepsych.models.BinaryClassificationGP attribute)
(aepsych.models.ContinuousRegressionGP attribute)
(aepsych.models.gp_classification.GPBetaRegressionModel attribute)
(aepsych.models.gp_classification.GPClassificationModel attribute)
(aepsych.models.GPBetaRegressionModel attribute)
(aepsych.models.GPClassificationModel attribute)
(aepsych.models.GPRegressionModel attribute)
(aepsych.models.HadamardSemiPModel attribute)
(aepsych.models.IndependentMultitaskGPRModel attribute)
(aepsych.models.monotonic_rejection_gp.MonotonicRejectionGP attribute)
(aepsych.models.MonotonicRejectionGP attribute)
(aepsych.models.MultitaskGPRModel attribute)
(aepsych.models.OrdinalGP attribute)
(aepsych.models.OrdinalGPModel attribute)
(aepsych.models.PairwiseProbitModel attribute)
(aepsych.models.SemiParametricGPModel attribute)
outcome_types (aepsych.models.base.AEPsychMixin attribute)
outcome_value (aepsych.database.tables.DbOutcomeTable attribute)
P
p() (aepsych.benchmark.Problem method)
(aepsych.benchmark.problem.Problem method)
(aepsych.likelihoods.LinearBernoulliLikelihood method)
p_below_threshold() (aepsych.models.base.AEPsychMixin method)
(aepsych.models.base.ModelProtocol method)
p_hat() (aepsych.benchmark.Problem method)
(aepsych.benchmark.problem.Problem method)
p_true (aepsych.benchmark.Problem property)
(aepsych.benchmark.problem.Problem property)
PairwiseOptimizeAcqfGenerator (class in aepsych.generators)
PairwiseProbitModel (class in aepsych.models)
PairwiseSobolGenerator (class in aepsych.generators)
pandas() (aepsych.benchmark.Benchmark method)
(aepsych.benchmark.benchmark.Benchmark method)
param_name (aepsych.database.tables.DbParamTable attribute)
param_value (aepsych.database.tables.DbParamTable attribute)
parent (aepsych.database.tables.DbConfigTable attribute)
(aepsych.database.tables.DbOutcomeTable attribute)
(aepsych.database.tables.DbParamTable attribute)
(aepsych.database.tables.DbRawTable attribute)
(aepsych.database.tables.DbReplayTable attribute)
(aepsych.database.tables.DbStratTable attribute)
parnames (aepsych.server.AEPsychServer property)
(aepsych.server.server.AEPsychServer property)
parse_argument() (in module aepsych.server.server)
participant_id (aepsych.database.tables.DBMasterTable attribute)
PathosBenchmark (class in aepsych.benchmark)
(class in aepsych.benchmark.pathos_benchmark)
perform_updates() (aepsych.database.db.Database method)
plot_contours() (aepsych.strategy.AEPsychStrategy method)
plot_slice() (aepsych.strategy.AEPsychStrategy method)
(in module aepsych.plotting)
plot_strat() (in module aepsych.plotting)
plot_strat_3d() (in module aepsych.plotting)
posterior() (aepsych.models.base.ModelProtocol method)
(aepsych.models.MonotonicProjectionGP method)
(aepsych.models.SemiParametricGPModel method)
posterior_at_xstar_xq() (in module aepsych.acquisition.lookahead_utils)
predict() (aepsych.models.base.AEPsychModel method)
(aepsych.models.base.ModelProtocol method)
(aepsych.models.gp_classification.GPClassificationModel method)
(aepsych.models.GPClassificationModel method)
(aepsych.models.GPRegressionModel method)
(aepsych.models.HadamardSemiPModel method)
(aepsych.models.monotonic_rejection_gp.MonotonicRejectionGP method)
(aepsych.models.MonotonicRejectionGP method)
(aepsych.models.PairwiseProbitModel method)
(aepsych.models.SemiParametricGPModel method)
(aepsych.strategy.Strategy method)
predict_probability() (aepsych.models.base.AEPsychModel method)
(aepsych.models.BinaryClassificationGP method)
(aepsych.models.gp_classification.GPClassificationModel method)
(aepsych.models.GPClassificationModel method)
(aepsych.models.monotonic_rejection_gp.MonotonicRejectionGP method)
(aepsych.models.MonotonicRejectionGP method)
(aepsych.models.OrdinalGP method)
(aepsych.models.PairwiseProbitModel method)
predict_probs() (aepsych.models.OrdinalGPModel method)
ProbitObjective (class in aepsych.acquisition)
(class in aepsych.acquisition.objective)
Problem (class in aepsych.benchmark)
(class in aepsych.benchmark.problem)
promote_0d() (in module aepsych.utils)
PySocket (class in aepsych.server.sockets)
R
RandomGenerator (class in aepsych.generators)
(class in aepsych.generators.random_generator)
RBFKernelPartialObsGrad (class in aepsych.kernels.rbf_partial_grad)
receive() (aepsych.server.sockets.PySocket method)
record_config() (aepsych.database.db.Database method)
record_message() (aepsych.database.db.Database method)
record_outcome() (aepsych.database.db.Database method)
record_param() (aepsych.database.db.Database method)
record_raw() (aepsych.database.db.Database method)
record_setup() (aepsych.database.db.Database method)
record_strat() (aepsych.database.db.Database method)
register_module() (aepsych.config.Config class method)
register_object() (aepsych.config.Config class method)
registered_names (aepsych.config.Config attribute)
registry (aepsych.database.tables.Base attribute)
RejectionSampler (class in aepsych.acquisition.rejection_sampler)
replay() (aepsych.server.AEPsychServer method)
(aepsych.server.server.AEPsychServer method)
requires_update() (aepsych.database.tables.DbConfigTable static method)
(aepsych.database.tables.DBMasterTable static method)
(aepsych.database.tables.DbOutcomeTable static method)
(aepsych.database.tables.DbParamTable static method)
(aepsych.database.tables.DbRawTable static method)
(aepsych.database.tables.DbReplayTable static method)
(aepsych.database.tables.DbStratTable static method)
return_socket() (aepsych.server.sockets.PySocket method)
run_benchmarks() (aepsych.benchmark.Benchmark method)
(aepsych.benchmark.benchmark.Benchmark method)
(aepsych.benchmark.pathos_benchmark.PathosBenchmark method)
(aepsych.benchmark.PathosBenchmark method)
run_benchmarks_with_checkpoints() (in module aepsych.benchmark)
(in module aepsych.benchmark.pathos_benchmark)
run_experiment() (aepsych.benchmark.Benchmark method)
(aepsych.benchmark.benchmark.Benchmark method)
(aepsych.benchmark.pathos_benchmark.PathosBenchmark method)
(aepsych.benchmark.PathosBenchmark method)
S
sample() (aepsych.models.base.AEPsychModel method)
(aepsych.models.base.ModelProtocol method)
(aepsych.models.gp_classification.GPClassificationModel method)
(aepsych.models.GPClassificationModel method)
(aepsych.models.GPRegressionModel method)
(aepsych.models.monotonic_rejection_gp.MonotonicRejectionGP method)
(aepsych.models.MonotonicProjectionGP method)
(aepsych.models.MonotonicRejectionGP method)
(aepsych.models.PairwiseProbitModel method)
(aepsych.models.SemiParametricGPModel method)
(aepsych.strategy.Strategy method)
sample_y() (aepsych.benchmark.Problem method)
(aepsych.benchmark.problem.Problem method)
semi_p_posterior_transform() (in module aepsych.models)
SemiParametricGPModel (class in aepsych.models)
SemiPProbabilityObjective (class in aepsych.acquisition.objective)
SemiPThresholdObjective (class in aepsych.acquisition.objective)
send() (aepsych.server.sockets.PySocket method)
SequentialStrategy (class in aepsych.strategy)
serve() (aepsych.server.AEPsychServer method)
(aepsych.server.server.AEPsychServer method)
session_scope() (aepsych.database.db.Database method)
set_train_data() (aepsych.models.base.AEPsychMixin method)
SimplifyArrays() (in module aepsych.server.sockets)
SMOCU (class in aepsych.acquisition.lookahead)
SobolGenerator (class in aepsych.generators)
(class in aepsych.generators.sobol_generator)
song_mean_covar_factory() (in module aepsych.factory)
(in module aepsych.factory.factory)
start_benchmarks() (aepsych.benchmark.pathos_benchmark.PathosBenchmark method)
(aepsych.benchmark.PathosBenchmark method)
start_server() (in module aepsych.server.server)
startServerAndRun() (in module aepsych.server.server)
stimuli_per_trial (aepsych.generators.base.AEPsychGenerator attribute)
(aepsych.generators.PairwiseOptimizeAcqfGenerator attribute)
(aepsych.generators.PairwiseSobolGenerator attribute)
(aepsych.models.base.ModelProtocol property)
(aepsych.models.BinaryClassificationGP attribute)
(aepsych.models.ContinuousRegressionGP attribute)
(aepsych.models.gp_classification.GPClassificationModel attribute)
(aepsych.models.GPClassificationModel attribute)
(aepsych.models.GPRegressionModel attribute)
(aepsych.models.HadamardSemiPModel attribute)
(aepsych.models.IndependentMultitaskGPRModel attribute)
(aepsych.models.monotonic_rejection_gp.MonotonicRejectionGP attribute)
(aepsych.models.MonotonicRejectionGP attribute)
(aepsych.models.MultitaskGPRModel attribute)
(aepsych.models.PairwiseProbitModel attribute)
(aepsych.models.SemiParametricGPModel attribute)
strat (aepsych.database.tables.DbStratTable attribute)
(aepsych.server.AEPsychServer property)
(aepsych.server.server.AEPsychServer property)
(aepsych.strategy.AEPsychStrategy property)
Strategy (class in aepsych.strategy)
SUR_fn() (in module aepsych.acquisition.lookahead)
T
threshold (aepsych.benchmark.LSEProblem attribute)
(aepsych.benchmark.problem.LSEProblem attribute)
timestamp (aepsych.database.tables.DbConfigTable attribute)
(aepsych.database.tables.DbRawTable attribute)
(aepsych.database.tables.DbReplayTable attribute)
(aepsych.database.tables.DbStratTable attribute)
to_dict() (aepsych.config.Config method)
train_inputs (aepsych.models.base.ModelProtocol property)
training (aepsych.models.GPBetaRegressionModel attribute)
(aepsych.models.GPClassificationModel attribute)
(aepsych.models.MonotonicRejectionGP attribute)
true_below_threshold (aepsych.benchmark.LSEProblem property)
(aepsych.benchmark.problem.LSEProblem property)
U
ub (aepsych.benchmark.Problem property)
(aepsych.benchmark.problem.Problem property)
(aepsych.models.base.ModelProtocol property)
unique_id (aepsych.database.tables.DbConfigTable attribute)
(aepsych.database.tables.DBMasterTable attribute)
(aepsych.database.tables.DbOutcomeTable attribute)
(aepsych.database.tables.DbParamTable attribute)
(aepsych.database.tables.DbRawTable attribute)
(aepsych.database.tables.DbReplayTable attribute)
(aepsych.database.tables.DbStratTable attribute)
update() (aepsych.config.Config method)
(aepsych.database.tables.DbConfigTable static method)
(aepsych.database.tables.DBMasterTable static method)
(aepsych.database.tables.DbOutcomeTable static method)
(aepsych.database.tables.DbParamTable static method)
(aepsych.database.tables.DbRawTable static method)
(aepsych.database.tables.DbReplayTable static method)
(aepsych.database.tables.DbStratTable static method)
(aepsych.models.base.ModelProtocol method)
(aepsych.models.gp_classification.GPClassificationModel method)
(aepsych.models.GPClassificationModel method)
(aepsych.models.GPRegressionModel method)
(aepsych.models.monotonic_rejection_gp.MonotonicRejectionGP method)
(aepsych.models.MonotonicRejectionGP method)
(aepsych.models.PairwiseProbitModel method)
(aepsych.strategy.Strategy method)
use_extra_info (aepsych.database.tables.DbReplayTable attribute)
V
VariationalGP (class in aepsych.models)
version (aepsych.config.Config property)
W
write_strats() (aepsych.server.AEPsychServer method)
(aepsych.server.server.AEPsychServer method)
AEPsych
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aepsych.acquisition
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aepsych.factory
aepsych.generators
aepsych.kernels
aepsych.means
aepsych.models
aepsych.server
aepsych.config
aepsych.likelihoods
aepsych.plotting
aepsych.strategy
aepsych.utils_logging
aepsych.utils
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