AEPsych
Demos
Docs
Tutorials
API Reference
GitHub
Index
A
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B
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C
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D
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E
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F
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G
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H
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I
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J
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
A
accept_client() (aepsych.server.sockets.PySocket method)
AcqArgProtocol (class in aepsych.generators.base)
acqf (aepsych.generators.base.AEPsychGenerator attribute)
(aepsych.generators.OptimizeAcqfGenerator attribute)
acqf_kwargs (aepsych.generators.base.AEPsychGenerator attribute)
(aepsych.generators.OptimizeAcqfGenerator attribute)
AcqfThompsonSamplerGenerator (class in aepsych.generators)
acquisition() (aepsych.acquisition.BernoulliMCMutualInformation method)
(aepsych.acquisition.lse.MCLevelSetEstimation method)
(aepsych.acquisition.mc_posterior_variance.MCPosteriorVariance method)
(aepsych.acquisition.mc_posterior_variance.MonotonicMCPosteriorVariance method)
(aepsych.acquisition.MCLevelSetEstimation method)
(aepsych.acquisition.MCPosteriorVariance method)
(aepsych.acquisition.monotonic_rejection.MonotonicMCAcquisition method)
(aepsych.acquisition.monotonic_rejection.MonotonicMCLSE method)
(aepsych.acquisition.MonotonicBernoulliMCMutualInformation method)
(aepsych.acquisition.MonotonicMCLSE method)
(aepsych.acquisition.MonotonicMCPosteriorVariance method)
(aepsych.acquisition.mutual_information.BernoulliMCMutualInformation method)
(aepsych.acquisition.mutual_information.MonotonicBernoulliMCMutualInformation method)
add_data() (aepsych.strategy.SequentialStrategy method)
(aepsych.strategy.Strategy method)
aepsych.acquisition
module
aepsych.acquisition.bvn
module
aepsych.acquisition.lookahead
module
aepsych.acquisition.lookahead_utils
module
aepsych.acquisition.lse
module
aepsych.acquisition.mc_posterior_variance
module
aepsych.acquisition.monotonic_rejection
module
aepsych.acquisition.mutual_information
module
aepsych.acquisition.objective
module
aepsych.acquisition.rejection_sampler
module
aepsych.benchmark
module
aepsych.benchmark.benchmark
module
aepsych.benchmark.pathos_benchmark
module
aepsych.benchmark.problem
module
aepsych.benchmark.test_functions
module
aepsych.config
module
aepsych.database
module
aepsych.database.db
module
aepsych.database.tables
module
aepsych.factory
module
aepsych.generators
module
aepsych.generators.base
module
aepsych.generators.epsilon_greedy_generator
module
aepsych.generators.manual_generator
module
aepsych.generators.monotonic_rejection_generator
module
aepsych.generators.monotonic_thompson_sampler_generator
module
aepsych.generators.optimize_acqf_generator
module
aepsych.generators.random_generator
module
aepsych.generators.sobol_generator
module
aepsych.kernels
module
aepsych.kernels.rbf_partial_grad
module
aepsych.likelihoods
module
aepsych.means
module
aepsych.means.constant_partial_grad
module
aepsych.models
module
aepsych.models.base
module
aepsych.models.derivative_gp
module
aepsych.models.gp_classification
module
aepsych.models.monotonic_rejection_gp
module
aepsych.plotting
module
aepsych.server
module
aepsych.server.server
module
aepsych.server.sockets
module
aepsych.strategy
module
aepsych.utils
module
aepsych.utils_logging
module
AEPsychGenerator (class in aepsych.generators.base)
AEPsychMixin (class in aepsych.models.base)
AEPsychModelDeviceMixin (class in aepsych.models.base)
AEPsychObjective (class in aepsych.acquisition.objective)
AEPsychServer (class in aepsych.server)
(class in aepsych.server.server)
ApproxGlobalSUR (class in aepsych.acquisition)
(class in aepsych.acquisition.lookahead)
approximate_lookahead_levelset_at_xstar() (in module aepsych.acquisition.lookahead_utils)
B
bald_acq() (in module aepsych.acquisition.mutual_information)
balv_acq() (in module aepsych.acquisition.mc_posterior_variance)
Base (class in aepsych.database.tables)
baseline_requiring_acqfs (aepsych.generators.AcqfThompsonSamplerGenerator attribute)
(aepsych.generators.base.AEPsychGenerator attribute)
(aepsych.generators.optimize_acqf_generator.OptimizeAcqfGenerator attribute)
(aepsych.generators.OptimizeAcqfGenerator attribute)
BEMPS (class in aepsych.acquisition.lookahead)
Benchmark (class in aepsych.benchmark)
(class in aepsych.benchmark.benchmark)
BernoulliMCMutualInformation (class in aepsych.acquisition)
(class in aepsych.acquisition.mutual_information)
BernoulliObjectiveLikelihood (class in aepsych.likelihoods)
bounds (aepsych.benchmark.ContrastSensitivity6d attribute)
(aepsych.benchmark.DiscrimHighDim attribute)
(aepsych.benchmark.DiscrimLowDim attribute)
(aepsych.benchmark.Hartmann6Binary attribute)
(aepsych.benchmark.Problem property)
(aepsych.benchmark.problem.Problem property)
(aepsych.models.base.AEPsychMixin property)
(aepsych.models.base.ModelProtocol property)
bvn_cdf() (in module aepsych.acquisition.bvn)
C
calculate_probs() (aepsych.models.OrdinalGPModel method)
can_fit (aepsych.strategy.Strategy property)
can_pregen_ask (aepsych.server.AEPsychServer property)
(aepsych.server.server.AEPsychServer property)
cdf_new_novel_det() (in module aepsych.benchmark.test_functions)
cdf_new_novel_det_3D() (in module aepsych.benchmark.test_functions)
cdf_new_novel_det_channels() (in module aepsych.benchmark.test_functions)
children_config (aepsych.database.tables.DBMasterTable attribute)
children_outcome (aepsych.database.tables.DbRawTable attribute)
children_param (aepsych.database.tables.DbRawTable attribute)
children_raw (aepsych.database.tables.DBMasterTable attribute)
children_replay (aepsych.database.tables.DBMasterTable attribute)
children_strat (aepsych.database.tables.DBMasterTable attribute)
ClassErr() (in module aepsych.acquisition.lookahead)
cleanup() (aepsych.server.AEPsychServer method)
(aepsych.server.server.AEPsychServer method)
close() (aepsych.server.sockets.DummySocket method)
(aepsych.server.sockets.PySocket method)
collate_benchmarks() (aepsych.benchmark.pathos_benchmark.PathosBenchmark method)
(aepsych.benchmark.PathosBenchmark method)
config (aepsych.database.tables.DbConfigTable attribute)
(aepsych.server.AEPsychServer property)
(aepsych.server.server.AEPsychServer property)
Config (class in aepsych.config)
ConfigurableMixin (class in aepsych.config)
ConstantMeanPartialObsGrad (class in aepsych.means.constant_partial_grad)
construct_inputs() (aepsych.models.GPRegressionModel class method)
(aepsych.models.MultitaskGPRModel class method)
(in module aepsych.acquisition.mc_posterior_variance)
construct_inputs_global_lookahead() (in module aepsych.acquisition.lookahead)
construct_inputs_local_lookahead() (in module aepsych.acquisition.lookahead)
construct_inputs_lse() (in module aepsych.acquisition.lse)
construct_inputs_mi() (in module aepsych.acquisition.mutual_information)
ContrastSensitivity6d (class in aepsych.benchmark)
convert() (aepsych.config.Config method)
convert_to_latest() (aepsych.config.Config method)
cutpoints (aepsych.likelihoods.OrdinalLikelihood property)
D
Database (class in aepsych.database.db)
DbConfigTable (class in aepsych.database.tables)
DBMasterTable (class in aepsych.database.tables)
DbOutcomeTable (class in aepsych.database.tables)
DbParamTable (class in aepsych.database.tables)
DbRawTable (class in aepsych.database.tables)
DbReplayTable (class in aepsych.database.tables)
DbStratTable (class in aepsych.database.tables)
default_loss_constraint_fun() (in module aepsych.generators.monotonic_rejection_generator)
default_mean_covar_factory() (in module aepsych.factory)
delete_db() (aepsych.database.db.Database method)
DerivedValue (class in aepsych.benchmark)
(class in aepsych.benchmark.benchmark)
device (aepsych.models.base.AEPsychModelDeviceMixin property)
(aepsych.models.base.ModelProtocol property)
dim (aepsych.models.base.ModelProtocol property)
dim_grid() (aepsych.models.base.AEPsychMixin method)
(aepsych.models.base.ModelProtocol method)
(in module aepsych.utils)
discrim_highdim() (in module aepsych.benchmark)
(in module aepsych.benchmark.test_functions)
DiscrimHighDim (class in aepsych.benchmark)
DiscrimLowDim (class in aepsych.benchmark)
DummySocket (class in aepsych.server.sockets)
E
EAVC (class in aepsych.acquisition)
(class in aepsych.acquisition.lookahead)
EAVC_fn() (in module aepsych.acquisition.lookahead)
ensure_model_is_fresh() (in module aepsych.strategy)
eps (aepsych.benchmark.LSEProblemWithEdgeLogging attribute)
(aepsych.benchmark.problem.LSEProblemWithEdgeLogging attribute)
EpsilonGreedyGenerator (class in aepsych.generators)
(class in aepsych.generators.epsilon_greedy_generator)
eval_grid (aepsych.benchmark.Problem property)
(aepsych.benchmark.problem.Problem property)
evaluate() (aepsych.benchmark.LSEProblem method)
(aepsych.benchmark.LSEProblemWithEdgeLogging method)
(aepsych.benchmark.Problem method)
(aepsych.benchmark.problem.LSEProblem method)
(aepsych.benchmark.problem.LSEProblemWithEdgeLogging method)
(aepsych.benchmark.problem.Problem method)
execute_sql_query() (aepsych.database.db.Database method)
expected_log_prob() (aepsych.likelihoods.LinearBernoulliLikelihood method)
experiment_description (aepsych.database.tables.DBMasterTable attribute)
experiment_id (aepsych.database.tables.DBMasterTable attribute)
experiment_name (aepsych.database.tables.DBMasterTable attribute)
extra_info (aepsych.database.tables.DbReplayTable attribute)
extra_metadata (aepsych.database.tables.DBMasterTable attribute)
extremum_solver (aepsych.models.base.AEPsychMixin attribute)
(aepsych.models.base.ModelProtocol property)
F
f() (aepsych.benchmark.ContrastSensitivity6d method)
(aepsych.benchmark.DiscrimHighDim method)
(aepsych.benchmark.DiscrimLowDim method)
(aepsych.benchmark.Hartmann6Binary method)
(aepsych.benchmark.Problem method)
(aepsych.benchmark.problem.Problem method)
(aepsych.likelihoods.LinearBernoulliLikelihood method)
f_1d() (in module aepsych.benchmark.test_functions)
f_2d() (in module aepsych.benchmark.test_functions)
f_hat() (aepsych.benchmark.Problem method)
(aepsych.benchmark.problem.Problem method)
f_pairwise() (in module aepsych.benchmark.test_functions)
f_threshold() (aepsych.benchmark.LSEProblem method)
(aepsych.benchmark.problem.LSEProblem method)
f_true (aepsych.benchmark.Problem property)
(aepsych.benchmark.problem.Problem property)
finish() (aepsych.strategy.SequentialStrategy method)
(aepsych.strategy.Strategy method)
finished (aepsych.generators.manual_generator.ManualGenerator property)
(aepsych.generators.ManualGenerator property)
(aepsych.strategy.SequentialStrategy property)
(aepsych.strategy.Strategy property)
fit() (aepsych.models.base.ModelProtocol method)
(aepsych.models.gp_classification.GPClassificationModel method)
(aepsych.models.GPClassificationModel method)
(aepsych.models.GPRegressionModel method)
(aepsych.models.monotonic_rejection_gp.MonotonicRejectionGP method)
(aepsych.models.MonotonicRejectionGP method)
(aepsych.models.PairwiseProbitModel method)
(aepsych.models.SemiParametricGPModel method)
(aepsych.strategy.Strategy method)
flatten_config() (aepsych.benchmark.Benchmark method)
(aepsych.benchmark.benchmark.Benchmark method)
FloorGumbelObjective (class in aepsych.acquisition)
(class in aepsych.acquisition.objective)
FloorLogitObjective (class in aepsych.acquisition)
(class in aepsych.acquisition.objective)
FloorProbitObjective (class in aepsych.acquisition)
(class in aepsych.acquisition.objective)
forward() (aepsych.acquisition.BernoulliMCMutualInformation method)
(aepsych.acquisition.lookahead.GlobalLookaheadAcquisitionFunction method)
(aepsych.acquisition.lookahead.LocalLookaheadAcquisitionFunction method)
(aepsych.acquisition.lse.MCLevelSetEstimation method)
(aepsych.acquisition.mc_posterior_variance.MCPosteriorVariance method)
(aepsych.acquisition.MCLevelSetEstimation method)
(aepsych.acquisition.MCPosteriorVariance method)
(aepsych.acquisition.monotonic_rejection.MonotonicMCAcquisition method)
(aepsych.acquisition.mutual_information.BernoulliMCMutualInformation method)
(aepsych.acquisition.objective.ProbitObjective method)
(aepsych.acquisition.objective.SemiPProbabilityObjective method)
(aepsych.acquisition.objective.SemiPThresholdObjective method)
(aepsych.acquisition.ProbitObjective method)
(aepsych.acquisition.rejection_sampler.RejectionSampler method)
(aepsych.kernels.PairwiseKernel method)
(aepsych.kernels.rbf_partial_grad.RBFKernelPartialObsGrad method)
(aepsych.kernels.RBFKernelPartialObsGrad method)
(aepsych.likelihoods.BernoulliObjectiveLikelihood method)
(aepsych.likelihoods.LinearBernoulliLikelihood method)
(aepsych.likelihoods.OrdinalLikelihood method)
(aepsych.means.constant_partial_grad.ConstantMeanPartialObsGrad method)
(aepsych.models.base.AEPsychMixin method)
(aepsych.models.derivative_gp.MixedDerivativeVariationalGP method)
(aepsych.models.HadamardSemiPModel method)
(aepsych.models.IndependentMultitaskGPRModel method)
(aepsych.models.monotonic_rejection_gp.MonotonicRejectionGP method)
(aepsych.models.MonotonicRejectionGP method)
(aepsych.models.MultitaskGPRModel method)
from_config() (aepsych.acquisition.objective.SemiPProbabilityObjective class method)
(aepsych.acquisition.objective.SemiPThresholdObjective class method)
(aepsych.config.ConfigurableMixin class method)
(aepsych.generators.AcqfThompsonSamplerGenerator class method)
(aepsych.generators.base.AcqArgProtocol class method)
(aepsych.generators.base.AEPsychGenerator class method)
(aepsych.generators.epsilon_greedy_generator.EpsilonGreedyGenerator class method)
(aepsych.generators.EpsilonGreedyGenerator class method)
(aepsych.generators.manual_generator.ManualGenerator class method)
(aepsych.generators.ManualGenerator class method)
(aepsych.generators.monotonic_rejection_generator.MonotonicRejectionGenerator class method)
(aepsych.generators.monotonic_thompson_sampler_generator.MonotonicThompsonSamplerGenerator class method)
(aepsych.generators.MonotonicRejectionGenerator class method)
(aepsych.generators.MonotonicThompsonSamplerGenerator class method)
(aepsych.generators.optimize_acqf_generator.OptimizeAcqfGenerator class method)
(aepsych.generators.OptimizeAcqfGenerator class method)
(aepsych.generators.PairwiseOptimizeAcqfGenerator class method)
(aepsych.generators.PairwiseSobolGenerator class method)
(aepsych.generators.random_generator.RandomGenerator class method)
(aepsych.generators.RandomGenerator class method)
(aepsych.generators.sobol_generator.SobolGenerator class method)
(aepsych.generators.SobolGenerator class method)
(aepsych.likelihoods.BernoulliObjectiveLikelihood class method)
(aepsych.likelihoods.LinearBernoulliLikelihood class method)
(aepsych.likelihoods.OrdinalLikelihood class method)
(aepsych.models.gp_classification.GPClassificationModel class method)
(aepsych.models.GPClassificationModel class method)
(aepsych.models.GPRegressionModel class method)
(aepsych.models.HadamardSemiPModel class method)
(aepsych.models.monotonic_rejection_gp.MonotonicRejectionGP class method)
(aepsych.models.MonotonicProjectionGP class method)
(aepsych.models.MonotonicRejectionGP class method)
(aepsych.models.PairwiseProbitModel class method)
(aepsych.models.SemiParametricGPModel class method)
(aepsych.strategy.SequentialStrategy class method)
(aepsych.strategy.Strategy class method)
from_sqlite() (aepsych.database.tables.DbConfigTable class method)
(aepsych.database.tables.DBMasterTable class method)
(aepsych.database.tables.DbOutcomeTable class method)
(aepsych.database.tables.DbParamTable class method)
(aepsych.database.tables.DbRawTable class method)
(aepsych.database.tables.DbReplayTable class method)
(aepsych.database.tables.DbStratTable class method)
G
gen() (aepsych.generators.AcqfThompsonSamplerGenerator method)
(aepsych.generators.base.AEPsychGenerator method)
(aepsych.generators.epsilon_greedy_generator.EpsilonGreedyGenerator method)
(aepsych.generators.EpsilonGreedyGenerator method)
(aepsych.generators.IntensityAwareSemiPGenerator method)
(aepsych.generators.manual_generator.ManualGenerator method)
(aepsych.generators.ManualGenerator method)
(aepsych.generators.monotonic_rejection_generator.MonotonicRejectionGenerator method)
(aepsych.generators.monotonic_thompson_sampler_generator.MonotonicThompsonSamplerGenerator method)
(aepsych.generators.MonotonicRejectionGenerator method)
(aepsych.generators.MonotonicThompsonSamplerGenerator method)
(aepsych.generators.optimize_acqf_generator.OptimizeAcqfGenerator method)
(aepsych.generators.OptimizeAcqfGenerator method)
(aepsych.generators.random_generator.RandomGenerator method)
(aepsych.generators.RandomGenerator method)
(aepsych.generators.sobol_generator.SobolGenerator method)
(aepsych.generators.SobolGenerator method)
(aepsych.strategy.SequentialStrategy method)
(aepsych.strategy.Strategy method)
generate_debug_info() (aepsych.server.AEPsychServer method)
(aepsych.server.server.AEPsychServer method)
generate_experiment_table() (aepsych.server.AEPsychServer method)
(aepsych.server.server.AEPsychServer method)
get_all_outcomes_for() (aepsych.database.db.Database method)
get_all_params_for() (aepsych.database.db.Database method)
get_bounds() (in module aepsych.utils)
get_config_args() (aepsych.models.IndependentMultitaskGPRModel class method)
get_config_for() (aepsych.database.db.Database method)
get_config_options() (aepsych.config.ConfigurableMixin class method)
(aepsych.generators.manual_generator.ManualGenerator class method)
(aepsych.generators.manual_generator.SampleAroundPointsGenerator class method)
(aepsych.generators.ManualGenerator class method)
(aepsych.generators.SampleAroundPointsGenerator class method)
get_dataframe_from_replay() (aepsych.server.AEPsychServer method)
(aepsych.server.server.AEPsychServer method)
get_engine() (aepsych.database.db.Database method)
get_jnd() (aepsych.models.base.AEPsychMixin method)
(aepsych.strategy.Strategy method)
get_jnd_1d() (in module aepsych.utils)
get_jnd_multid() (in module aepsych.utils)
get_lse_contour() (in module aepsych.utils)
get_lse_interval() (in module aepsych.utils)
get_master_record() (aepsych.database.db.Database method)
get_master_records() (aepsych.database.db.Database method)
get_max() (aepsych.models.base.AEPsychMixin method)
(aepsych.strategy.Strategy method)
get_min() (aepsych.models.base.AEPsychMixin method)
(aepsych.strategy.Strategy method)
get_next_filename() (in module aepsych.server.server)
get_optimizer_options() (in module aepsych.utils)
get_outcome_for() (aepsych.database.db.Database method)
get_param_for() (aepsych.database.db.Database method)
get_raw_for() (aepsych.database.db.Database method)
get_replay_for() (aepsych.database.db.Database method)
get_section() (aepsych.config.Config method)
get_strat_for() (aepsych.database.db.Database method)
get_strat_from_replay() (aepsych.server.AEPsychServer method)
(aepsych.server.server.AEPsychServer method)
get_strats_for() (aepsych.database.db.Database method)
get_strats_from_replay() (aepsych.server.AEPsychServer method)
(aepsych.server.server.AEPsychServer method)
getLogger() (in module aepsych.utils_logging)
GlobalLookaheadAcquisitionFunction (class in aepsych.acquisition.lookahead)
GlobalMI (class in aepsych.acquisition)
(class in aepsych.acquisition.lookahead)
GlobalSUR (class in aepsych.acquisition)
(class in aepsych.acquisition.lookahead)
GPBetaRegressionModel (class in aepsych.models)
(class in aepsych.models.gp_classification)
GPClassificationModel (class in aepsych.models)
(class in aepsych.models.gp_classification)
GPRegressionModel (class in aepsych.models)
H
HadamardSemiPModel (class in aepsych.models)
handle_request() (aepsych.server.AEPsychServer method)
(aepsych.server.server.AEPsychServer method)
Hartmann6Binary (class in aepsych.benchmark)
Hb() (in module aepsych.acquisition.lookahead)
I
IndependentMultitaskGPRModel (class in aepsych.models)
IntensityAwareSemiPGenerator (class in aepsych.generators)
interpolate_monotonic() (in module aepsych.utils)
inv_query() (aepsych.models.base.AEPsychMixin method)
(aepsych.strategy.Strategy method)
inverse() (aepsych.acquisition.objective.AEPsychObjective method)
(aepsych.acquisition.objective.ProbitObjective method)
(aepsych.acquisition.ProbitObjective method)
inverse_link() (aepsych.acquisition.FloorGumbelObjective method)
(aepsych.acquisition.FloorLogitObjective method)
(aepsych.acquisition.FloorProbitObjective method)
(aepsych.acquisition.objective.FloorGumbelObjective method)
(aepsych.acquisition.objective.FloorLogitObjective method)
(aepsych.acquisition.objective.FloorProbitObjective method)
is_done (aepsych.benchmark.pathos_benchmark.PathosBenchmark property)
(aepsych.benchmark.PathosBenchmark property)
is_update_required() (aepsych.database.db.Database method)
iteration_id (aepsych.database.tables.DbOutcomeTable attribute)
(aepsych.database.tables.DbParamTable attribute)
J
jsonifyAll() (aepsych.config.Config method)
jsonifyMetadata() (aepsych.config.Config method)
L
lb (aepsych.benchmark.Problem property)
(aepsych.benchmark.problem.Problem property)
(aepsych.models.base.ModelProtocol property)
likelihood (aepsych.models.base.ModelProtocol property)
(aepsych.models.GPBetaRegressionModel attribute)
(aepsych.models.GPClassificationModel attribute)
(aepsych.models.MonotonicRejectionGP attribute)
LinearBernoulliLikelihood (class in aepsych.likelihoods)
link() (aepsych.acquisition.FloorGumbelObjective method)
(aepsych.acquisition.FloorLogitObjective method)
(aepsych.acquisition.FloorProbitObjective method)
(aepsych.acquisition.objective.FloorGumbelObjective method)
(aepsych.acquisition.objective.FloorLogitObjective method)
(aepsych.acquisition.objective.FloorProbitObjective method)
list_master_records() (aepsych.database.db.Database method)
LocalLookaheadAcquisitionFunction (class in aepsych.acquisition.lookahead)
LocalMI (class in aepsych.acquisition)
(class in aepsych.acquisition.lookahead)
LocalSUR (class in aepsych.acquisition)
(class in aepsych.acquisition.lookahead)
log_at() (aepsych.benchmark.Benchmark method)
(aepsych.benchmark.benchmark.Benchmark method)
lookahead_levelset_at_xstar() (in module aepsych.acquisition.lookahead_utils)
lookahead_p_at_xstar() (in module aepsych.acquisition.lookahead_utils)
LookaheadAcquisitionFunction (class in aepsych.acquisition.lookahead)
LSEProblem (class in aepsych.benchmark)
(class in aepsych.benchmark.problem)
LSEProblemWithEdgeLogging (class in aepsych.benchmark)
(class in aepsych.benchmark.problem)
M
main() (in module aepsych.server.server)
make_benchmark_list() (aepsych.benchmark.Benchmark method)
(aepsych.benchmark.benchmark.Benchmark method)
make_scaled_sobol() (in module aepsych.utils)
make_songetal_testfun() (in module aepsych.benchmark)
(in module aepsych.benchmark.test_functions)
make_songetal_threshfun() (in module aepsych.benchmark.test_functions)
make_strat_and_flatconfig() (aepsych.benchmark.Benchmark method)
(aepsych.benchmark.benchmark.Benchmark method)
ManualGenerator (class in aepsych.generators)
(class in aepsych.generators.manual_generator)
master_table_id (aepsych.database.tables.DbConfigTable attribute)
(aepsych.database.tables.DbRawTable attribute)
(aepsych.database.tables.DbReplayTable attribute)
(aepsych.database.tables.DbStratTable attribute)
materialize_config() (aepsych.benchmark.Benchmark method)
(aepsych.benchmark.benchmark.Benchmark method)
max_asks (aepsych.generators.base.AEPsychGenerator attribute)
MCLevelSetEstimation (class in aepsych.acquisition)
(class in aepsych.acquisition.lse)
MCPosteriorVariance (class in aepsych.acquisition)
(class in aepsych.acquisition.mc_posterior_variance)
message_contents (aepsych.database.tables.DbReplayTable attribute)
message_type (aepsych.database.tables.DbReplayTable attribute)
metadata (aepsych.benchmark.LSEProblem property)
(aepsych.benchmark.Problem property)
(aepsych.benchmark.problem.LSEProblem property)
(aepsych.benchmark.problem.Problem property)
(aepsych.database.tables.Base attribute)
MI_fn() (in module aepsych.acquisition.lookahead)
MixedDerivativeVariationalGP (class in aepsych.models.derivative_gp)
MOCU (class in aepsych.acquisition.lookahead)
model_data (aepsych.database.tables.DbRawTable attribute)
ModelProtocol (class in aepsych.models.base)
modified_hartmann6() (in module aepsych.benchmark)
(in module aepsych.benchmark.test_functions)
module
aepsych.acquisition
aepsych.acquisition.bvn
aepsych.acquisition.lookahead
aepsych.acquisition.lookahead_utils
aepsych.acquisition.lse
aepsych.acquisition.mc_posterior_variance
aepsych.acquisition.monotonic_rejection
aepsych.acquisition.mutual_information
aepsych.acquisition.objective
aepsych.acquisition.rejection_sampler
aepsych.benchmark
aepsych.benchmark.benchmark
aepsych.benchmark.pathos_benchmark
aepsych.benchmark.problem
aepsych.benchmark.test_functions
aepsych.config
aepsych.database
aepsych.database.db
aepsych.database.tables
aepsych.factory
aepsych.generators
aepsych.generators.base
aepsych.generators.epsilon_greedy_generator
aepsych.generators.manual_generator
aepsych.generators.monotonic_rejection_generator
aepsych.generators.monotonic_thompson_sampler_generator
aepsych.generators.optimize_acqf_generator
aepsych.generators.random_generator
aepsych.generators.sobol_generator
aepsych.kernels
aepsych.kernels.rbf_partial_grad
aepsych.likelihoods
aepsych.means
aepsych.means.constant_partial_grad
aepsych.models
aepsych.models.base
aepsych.models.derivative_gp
aepsych.models.gp_classification
aepsych.models.monotonic_rejection_gp
aepsych.plotting
aepsych.server
aepsych.server.server
aepsych.server.sockets
aepsych.strategy
aepsych.utils
aepsych.utils_logging
monotonic_mean_covar_factory() (in module aepsych.factory)
MonotonicBernoulliMCMutualInformation (class in aepsych.acquisition)
(class in aepsych.acquisition.mutual_information)
MonotonicMCAcquisition (class in aepsych.acquisition.monotonic_rejection)
MonotonicMCLSE (class in aepsych.acquisition)
(class in aepsych.acquisition.monotonic_rejection)
MonotonicMCPosteriorVariance (class in aepsych.acquisition)
(class in aepsych.acquisition.mc_posterior_variance)
MonotonicProjectionGP (class in aepsych.models)
MonotonicRejectionGenerator (class in aepsych.generators)
(class in aepsych.generators.monotonic_rejection_generator)
MonotonicRejectionGP (class in aepsych.models)
(class in aepsych.models.monotonic_rejection_gp)
MonotonicThompsonSamplerGenerator (class in aepsych.generators)
(class in aepsych.generators.monotonic_thompson_sampler_generator)
MultitaskGPRModel (class in aepsych.models)
N
n_eval_points (aepsych.benchmark.Problem attribute)
(aepsych.benchmark.problem.Problem attribute)
n_strats (aepsych.server.AEPsychServer property)
(aepsych.server.server.AEPsychServer property)
n_trials (aepsych.strategy.Strategy property)
name (aepsych.benchmark.ContrastSensitivity6d attribute)
(aepsych.benchmark.DiscrimHighDim attribute)
(aepsych.benchmark.DiscrimLowDim attribute)
(aepsych.benchmark.Hartmann6Binary attribute)
(aepsych.benchmark.Problem property)
(aepsych.benchmark.problem.Problem property)
new_novel_det() (in module aepsych.benchmark.test_functions)
new_novel_det_3D() (in module aepsych.benchmark.test_functions)
new_novel_det_3D_params() (in module aepsych.benchmark.test_functions)
new_novel_det_channels() (in module aepsych.benchmark.test_functions)
new_novel_det_channels_params() (in module aepsych.benchmark.test_functions)
new_novel_det_params() (in module aepsych.benchmark.test_functions)
no_gpu_acqfs (aepsych.strategy.Strategy attribute)
normalize_inputs() (aepsych.strategy.Strategy method)
novel_detection_testfun() (in module aepsych.benchmark)
(in module aepsych.benchmark.test_functions)
novel_discrimination_testfun() (in module aepsych.benchmark)
(in module aepsych.benchmark.test_functions)
num_benchmarks (aepsych.benchmark.Benchmark property)
(aepsych.benchmark.benchmark.Benchmark property)
num_outputs_per_input() (aepsych.kernels.rbf_partial_grad.RBFKernelPartialObsGrad method)
(aepsych.kernels.RBFKernelPartialObsGrad method)
O
OptimizeAcqfGenerator (class in aepsych.generators)
(class in aepsych.generators.optimize_acqf_generator)
ordinal_mean_covar_factory() (in module aepsych.factory)
OrdinalGPModel (class in aepsych.models)
OrdinalLikelihood (class in aepsych.likelihoods)
outcome_name (aepsych.database.tables.DbOutcomeTable attribute)
outcome_type (aepsych.models.base.ModelProtocol property)
(aepsych.models.gp_classification.GPBetaRegressionModel attribute)
(aepsych.models.gp_classification.GPClassificationModel attribute)
(aepsych.models.GPBetaRegressionModel attribute)
(aepsych.models.GPClassificationModel attribute)
(aepsych.models.GPRegressionModel attribute)
(aepsych.models.HadamardSemiPModel attribute)
(aepsych.models.IndependentMultitaskGPRModel attribute)
(aepsych.models.monotonic_rejection_gp.MonotonicRejectionGP attribute)
(aepsych.models.MonotonicRejectionGP attribute)
(aepsych.models.MultitaskGPRModel attribute)
(aepsych.models.OrdinalGPModel attribute)
(aepsych.models.PairwiseProbitModel attribute)
(aepsych.models.SemiParametricGPModel attribute)
outcome_types (aepsych.models.base.AEPsychMixin attribute)
outcome_value (aepsych.database.tables.DbOutcomeTable attribute)
P
p() (aepsych.benchmark.Problem method)
(aepsych.benchmark.problem.Problem method)
(aepsych.likelihoods.LinearBernoulliLikelihood method)
p_below_threshold() (aepsych.models.base.AEPsychMixin method)
(aepsych.models.base.ModelProtocol method)
p_hat() (aepsych.benchmark.Problem method)
(aepsych.benchmark.problem.Problem method)
p_true (aepsych.benchmark.Problem property)
(aepsych.benchmark.problem.Problem property)
pairwise_mean_covar_factory() (in module aepsych.factory)
PairwiseKernel (class in aepsych.kernels)
PairwiseOptimizeAcqfGenerator (class in aepsych.generators)
PairwiseProbitModel (class in aepsych.models)
PairwiseSobolGenerator (class in aepsych.generators)
pandas() (aepsych.benchmark.Benchmark method)
(aepsych.benchmark.benchmark.Benchmark method)
param_name (aepsych.database.tables.DbParamTable attribute)
param_value (aepsych.database.tables.DbParamTable attribute)
ParameterConfigError
parent (aepsych.database.tables.DbConfigTable attribute)
(aepsych.database.tables.DbOutcomeTable attribute)
(aepsych.database.tables.DbParamTable attribute)
(aepsych.database.tables.DbRawTable attribute)
(aepsych.database.tables.DbReplayTable attribute)
(aepsych.database.tables.DbStratTable attribute)
parnames (aepsych.server.AEPsychServer property)
(aepsych.server.server.AEPsychServer property)
parse_argument() (in module aepsych.server.server)
participant_id (aepsych.database.tables.DBMasterTable attribute)
PathosBenchmark (class in aepsych.benchmark)
(class in aepsych.benchmark.pathos_benchmark)
perform_updates() (aepsych.database.db.Database method)
plot_slice() (in module aepsych.plotting)
plot_strat() (in module aepsych.plotting)
plot_strat_3d() (in module aepsych.plotting)
posterior() (aepsych.models.base.ModelProtocol method)
(aepsych.models.MonotonicProjectionGP method)
(aepsych.models.SemiParametricGPModel method)
posterior_at_xstar_xq() (in module aepsych.acquisition.lookahead_utils)
predict() (aepsych.models.base.ModelProtocol method)
(aepsych.models.gp_classification.GPClassificationModel method)
(aepsych.models.GPClassificationModel method)
(aepsych.models.GPRegressionModel method)
(aepsych.models.HadamardSemiPModel method)
(aepsych.models.monotonic_rejection_gp.MonotonicRejectionGP method)
(aepsych.models.MonotonicRejectionGP method)
(aepsych.models.PairwiseProbitModel method)
(aepsych.models.SemiParametricGPModel method)
(aepsych.strategy.Strategy method)
predict_probability() (aepsych.models.base.ModelProtocol method)
(aepsych.models.gp_classification.GPClassificationModel method)
(aepsych.models.GPClassificationModel method)
(aepsych.models.monotonic_rejection_gp.MonotonicRejectionGP method)
(aepsych.models.MonotonicRejectionGP method)
(aepsych.models.PairwiseProbitModel method)
predict_probs() (aepsych.models.OrdinalGPModel method)
ProbitObjective (class in aepsych.acquisition)
(class in aepsych.acquisition.objective)
Problem (class in aepsych.benchmark)
(class in aepsych.benchmark.problem)
promote_0d() (in module aepsych.utils)
PySocket (class in aepsych.server.sockets)
R
RandomGenerator (class in aepsych.generators)
(class in aepsych.generators.random_generator)
RBFKernelPartialObsGrad (class in aepsych.kernels)
(class in aepsych.kernels.rbf_partial_grad)
receive() (aepsych.server.sockets.PySocket method)
record_config() (aepsych.database.db.Database method)
record_message() (aepsych.database.db.Database method)
record_outcome() (aepsych.database.db.Database method)
record_param() (aepsych.database.db.Database method)
record_raw() (aepsych.database.db.Database method)
record_setup() (aepsych.database.db.Database method)
record_strat() (aepsych.database.db.Database method)
register_module() (aepsych.config.Config class method)
register_object() (aepsych.config.Config class method)
registered_names (aepsych.config.Config attribute)
registry (aepsych.database.tables.Base attribute)
RejectionSampler (class in aepsych.acquisition.rejection_sampler)
replay() (aepsych.server.AEPsychServer method)
(aepsych.server.server.AEPsychServer method)
requires_update() (aepsych.database.tables.DbConfigTable static method)
(aepsych.database.tables.DBMasterTable static method)
(aepsych.database.tables.DbOutcomeTable static method)
(aepsych.database.tables.DbParamTable static method)
(aepsych.database.tables.DbRawTable static method)
(aepsych.database.tables.DbReplayTable static method)
(aepsych.database.tables.DbStratTable static method)
return_socket() (aepsych.server.sockets.PySocket method)
run_benchmarks() (aepsych.benchmark.Benchmark method)
(aepsych.benchmark.benchmark.Benchmark method)
(aepsych.benchmark.pathos_benchmark.PathosBenchmark method)
(aepsych.benchmark.PathosBenchmark method)
run_benchmarks_with_checkpoints() (in module aepsych.benchmark)
(in module aepsych.benchmark.pathos_benchmark)
run_experiment() (aepsych.benchmark.Benchmark method)
(aepsych.benchmark.benchmark.Benchmark method)
(aepsych.benchmark.pathos_benchmark.PathosBenchmark method)
(aepsych.benchmark.PathosBenchmark method)
S
sample() (aepsych.models.base.ModelProtocol method)
(aepsych.models.gp_classification.GPClassificationModel method)
(aepsych.models.GPClassificationModel method)
(aepsych.models.GPRegressionModel method)
(aepsych.models.monotonic_rejection_gp.MonotonicRejectionGP method)
(aepsych.models.MonotonicProjectionGP method)
(aepsych.models.MonotonicRejectionGP method)
(aepsych.models.PairwiseProbitModel method)
(aepsych.models.SemiParametricGPModel method)
(aepsych.strategy.Strategy method)
sample_y() (aepsych.benchmark.Problem method)
(aepsych.benchmark.problem.Problem method)
SampleAroundPointsGenerator (class in aepsych.generators)
(class in aepsych.generators.manual_generator)
semi_p_posterior_transform() (in module aepsych.models)
SemiParametricGPModel (class in aepsych.models)
SemiPProbabilityObjective (class in aepsych.acquisition.objective)
SemiPThresholdObjective (class in aepsych.acquisition.objective)
send() (aepsych.server.sockets.PySocket method)
SequentialStrategy (class in aepsych.strategy)
serve() (aepsych.server.AEPsychServer method)
(aepsych.server.server.AEPsychServer method)
session_scope() (aepsych.database.db.Database method)
set_train_data() (aepsych.models.base.AEPsychMixin method)
(aepsych.models.base.AEPsychModelDeviceMixin method)
SimplifyArrays() (in module aepsych.server.sockets)
SMOCU (class in aepsych.acquisition.lookahead)
SobolGenerator (class in aepsych.generators)
(class in aepsych.generators.sobol_generator)
song_mean_covar_factory() (in module aepsych.factory)
start_benchmarks() (aepsych.benchmark.pathos_benchmark.PathosBenchmark method)
(aepsych.benchmark.PathosBenchmark method)
start_server() (in module aepsych.server.server)
startServerAndRun() (in module aepsych.server.server)
stimuli_per_trial (aepsych.generators.base.AEPsychGenerator attribute)
(aepsych.generators.PairwiseOptimizeAcqfGenerator attribute)
(aepsych.generators.PairwiseSobolGenerator attribute)
(aepsych.models.base.ModelProtocol property)
(aepsych.models.gp_classification.GPClassificationModel attribute)
(aepsych.models.GPClassificationModel attribute)
(aepsych.models.GPRegressionModel attribute)
(aepsych.models.HadamardSemiPModel attribute)
(aepsych.models.IndependentMultitaskGPRModel attribute)
(aepsych.models.monotonic_rejection_gp.MonotonicRejectionGP attribute)
(aepsych.models.MonotonicRejectionGP attribute)
(aepsych.models.MultitaskGPRModel attribute)
(aepsych.models.PairwiseProbitModel attribute)
(aepsych.models.SemiParametricGPModel attribute)
strat (aepsych.database.tables.DbStratTable attribute)
(aepsych.server.AEPsychServer property)
(aepsych.server.server.AEPsychServer property)
Strategy (class in aepsych.strategy)
SUR_fn() (in module aepsych.acquisition.lookahead)
T
target_new_novel_det() (in module aepsych.benchmark.test_functions)
target_new_novel_det_3D() (in module aepsych.benchmark.test_functions)
target_new_novel_det_channels() (in module aepsych.benchmark.test_functions)
timestamp (aepsych.database.tables.DbConfigTable attribute)
(aepsych.database.tables.DbRawTable attribute)
(aepsych.database.tables.DbReplayTable attribute)
(aepsych.database.tables.DbStratTable attribute)
to_dict() (aepsych.config.Config method)
train_inputs (aepsych.models.base.AEPsychMixin attribute)
(aepsych.models.base.AEPsychModelDeviceMixin property)
(aepsych.models.base.ModelProtocol property)
(aepsych.models.MonotonicRejectionGP attribute)
train_targets (aepsych.models.base.AEPsychMixin attribute)
(aepsych.models.base.AEPsychModelDeviceMixin property)
(aepsych.models.MonotonicRejectionGP attribute)
training (aepsych.models.GPBetaRegressionModel attribute)
(aepsych.models.GPClassificationModel attribute)
(aepsych.models.MonotonicRejectionGP attribute)
true_below_threshold (aepsych.benchmark.LSEProblem property)
(aepsych.benchmark.problem.LSEProblem property)
U
ub (aepsych.benchmark.Problem property)
(aepsych.benchmark.problem.Problem property)
(aepsych.models.base.ModelProtocol property)
unique_id (aepsych.database.tables.DbConfigTable attribute)
(aepsych.database.tables.DBMasterTable attribute)
(aepsych.database.tables.DbOutcomeTable attribute)
(aepsych.database.tables.DbParamTable attribute)
(aepsych.database.tables.DbRawTable attribute)
(aepsych.database.tables.DbReplayTable attribute)
(aepsych.database.tables.DbStratTable attribute)
update() (aepsych.config.Config method)
(aepsych.database.tables.DbConfigTable static method)
(aepsych.database.tables.DBMasterTable static method)
(aepsych.database.tables.DbOutcomeTable static method)
(aepsych.database.tables.DbParamTable static method)
(aepsych.database.tables.DbRawTable static method)
(aepsych.database.tables.DbReplayTable static method)
(aepsych.database.tables.DbStratTable static method)
(aepsych.models.base.ModelProtocol method)
(aepsych.models.gp_classification.GPClassificationModel method)
(aepsych.models.GPClassificationModel method)
(aepsych.models.GPRegressionModel method)
(aepsych.models.monotonic_rejection_gp.MonotonicRejectionGP method)
(aepsych.models.MonotonicRejectionGP method)
(aepsych.models.PairwiseProbitModel method)
(aepsych.strategy.Strategy method)
use_extra_info (aepsych.database.tables.DbReplayTable attribute)
V
version (aepsych.config.Config property)
W
write_strats() (aepsych.server.AEPsychServer method)
(aepsych.server.server.AEPsychServer method)
AEPsych
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aepsych.acquisition
aepsych.benchmark
aepsych.database
aepsych.factory
aepsych.generators
aepsych.kernels
aepsych.means
aepsych.models
aepsych.server
aepsych.config
aepsych.likelihoods
aepsych.plotting
aepsych.strategy
aepsych.utils_logging
aepsych.utils
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